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PDB to FASTA

This tool extracts protein/nucleotide sequences from PDB files.

PDB: 1rv1.pdb

Output (FASTA)

>1RV1:A UNP:Q00987 MDM2_HUMAN
ETLVRPKPELLKLLKSVGAQKDTYTMKEVLFYLGQYIMTKRLYDEKQQHIVYCSNDLLGD
LFGVPSFSVKEHRKIYTMIYRNLVV
>1RV1:B UNP:Q00987 MDM2_HUMAN
ETLVRPKPELLKLLKSVGAQKDTYTMKEVLFYLGQYIMTKRLYDEKQQHIVYCSNDLLGD
LFGVPSFSVKEHRKIYTMIYRNLVV
>1RV1:C UNP:Q00987 MDM2_HUMAN
ETLVRPKPELLKLLKSVGAQKDTYTMKEVLFYLGQYIMTKRLYDEKQQHIVYCSNDLLGD
LFGVPSFSVKEHRKIYTMIYRNLVV
1
>1RV1:A UNP:Q00987 MDM2_HUMAN
2
ETLVRPKPELLKLLKSVGAQKDTYTMKEVLFYLGQYIMTKRLYDEKQQHIVYCSNDLLGD
3
LFGVPSFSVKEHRKIYTMIYRNLVV
4
>1RV1:B UNP:Q00987 MDM2_HUMAN
5
ETLVRPKPELLKLLKSVGAQKDTYTMKEVLFYLGQYIMTKRLYDEKQQHIVYCSNDLLGD
6
LFGVPSFSVKEHRKIYTMIYRNLVV
7
>1RV1:C UNP:Q00987 MDM2_HUMAN
8
ETLVRPKPELLKLLKSVGAQKDTYTMKEVLFYLGQYIMTKRLYDEKQQHIVYCSNDLLGD
9
LFGVPSFSVKEHRKIYTMIYRNLVV
10

The extracted FASTA.

PDB to FASTA

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